If you left it sealed up, it's good to go.
By the way, you really don't need to run the entire contents through your lines. Just make sure your lines are clean first. I only put about a gallon in my clean fermenters. Then I seal it up and add about 10 psi to it. I pick it up and flip it over a few times to swish it all around the inside. Then I hook it up to my tap, without using C02 and let the residual pressure push star san out, until the pressure drops enough that it can't push it anymore.
You can leave the star san that's left in the keg and beer lines, until ready to fill. Just remember to not drink anything that comes out of the beer lines, until the beer has pushed the remaining star san out and you have good beer coming out.