Respectfully, I am not sure I follow what you are stating. The addition of sugar adds to the OG of the resultant wort. BeerSmith, and other programs, usually calculate the attenuation of the gravity based upon the apparent attenuation values for the yeast as applied to that percentage of the wort potential which is derived from malt (since that is how those attenuation numbers are measured) and then the sugars are calculated to ferment completely. This, in effect, covers what I think you are stating in your message.
The additional attenuation due to the sugar increases the apparent attenuation of the yeast beyond the published values. For instance, WY1214, Belgian abbey ale, has an apparent attenuation of 74% to 78% based upon the Wyeast website. When I use this yeast in my Belgian Tripel, I get a measured apparent attenuation of 86% due to the high use of sugars. That sugar adds 15 points to the OG of the wort, all of which ferments. This effect increases the OG and also lowers the FG, since there is no residual gravity from the sugars.
If you have some literature that contradicts this, please link to it as I would be most interested in reading the theory behind it.