Ok, so you have two charges of hops both set for 5 days. The program treats these hop charges as both going in together and staying in the fermenter for 5 days. I am assuming that you are adding one set of hops for 5 days and then removing them and adding another set. For the purposes of the program, the first set of hops is at the 10 day mark and should be set for 10 days, with the second charge going in for 5 days. Regardless of how long you leave the hops in the fermenter, the time scale for the addition is based upon the time of fermentation.
I was confused with your comment about the hops being added to secondary according to the program. There is nothing in the program which designates the hops as being in secondary. Maybe I am missing something.
If you are looking at the brew sheet, then the listing of the fermentation profile comes before the addition of dry hops, but this is not an indicator of them being in secondary. All dry hop listings would be noted in this manner on the brew sheet.