(continued from previous post--software wouldn't let me post!)
This leads to the hops utilization question, regarding which I've not found anything definitive backing up my thoughts here. When I use the "Add After Boil" flag in BeerSmith, depending on the base IBUs, they can increase by 5 points, or up to about 15 or 20 points. This halfway supports my above point, that the late addition leads to moderately more bitter brews. However, it's not clear why they are more bitter--is the carmelization creating unfermentable sugars that balance out the hops (like you'd experience in an AG full wort boil), or is hop utilization itself actually changing? Another brewer over at HBA's BrewBoard cited some research that without sugars in the boil, hop utilization actually goes down. I'll see if I can find that research and post it here.
At any rate, it may be either of those factors at work, both of them, or something else entirely. This is where I think the most difficulty comes in working this feature into the program, because I don't know if there has been any concrete proof that sugars are needed for hops utilization or not. Suffice it to say, with the late extract addition, beer seem more bitter, so adjust your hops to account for this. At present, I don't think that BeerSmith, or any other program for that matter, adequately accounts for the late addition--that's not really a fault of anyone, as this is a fairly recent innovation in homebrewing. I wish I was a scientist and had the resources, because I'd love to conduct such experiments!
While I think the late addition leads to some wonderful benefits in a completed brew, it does create some havoc on brew day. I generally add my extract with 15 minutes remaining in the boil. As an extract brewer, you're well aware of extract's propensity to kill a boil and then really foam like crazy once you get back to a boil. Basically, I go throughout the first 75% of the boil adding my hops at the proper intervals, then turn off the heat (I use a turker fryer with a 7.5 gallon kettle, so I can do full boils--another great boon to better tasting brew), dump in the extract and mix it up, add 15 minute hops if there are some, add my WhirlFloc/Irish Moss, and put in my immersion chiller. I throw the pot back on the heat at full blast, and get it back to a boil. It takes a minute or three to get it boiling again, and usually once it does, the extract begins to foam. I usually stop my timer until the wort starts boiling again. So, you can see how it can create a little extra work, and extra mess, if you're not careful. However, my opinion is that the payoff is definitely worth the slight inconveniences.
Alright, at this point, I've written a book, so I'm going to shut my trap. Let me know if you have any questions, as I'm glad to help out. I think if you give it a shot once or twice, you'll find that the late extract addition is a fairly painless way to really bump up the quality of your beers.
Brew on!
colin